Application Description
Wally is a commmand-line application to plot aligned reads. This is a simple frontend web application for wally that allows plotting slices of the 1000 Genomes Oxford Nanopore Technologies (ONT) data hosted on the International Genome Sample Resource (IGSR) FTP site. You can visualize both the CHM13 (T2T) and GRCh38 (hg38) alignments. All available data sets and samples can be found here. For short-read data sets, the paired-end coloring follows delly's structural variant nomenclature and is described here. Please note that many feature of wally are not yet available in the frontend web application like split-alignment views, dotplots or match views. Please use the command-line application for this.